qpAdm: parameter file: parqpadm.txt ### THE INPUT PARAMETERS ##PARAMETER NAME: VALUE fstatsname: /home/cdr/AdmixTools-master/bin/fstat_ancestry/fstatsa.txt popleft: /home/cdr/AdmixTools-master/bin/fstat_ancestry/left.txt popright: /home/cdr/AdmixTools-master/bin/fstat_ancestry/right.txt details: YES ## qpAdm version: 1520 seed: 172905401 *** recommended that inbreed be explicitly set *** inbreed set NO left pops: Sohi Iran_ShahrISokhta_BA2 Russia_Afanasievo Turkmenistan_C_Geoksyur Indian_GreatAndaman_100BP.SG right pops: Mbuti.DG Papuan.DG China_Tianyuan Karitiana.DG Russia_Ust_Ishim_HG.DG Ami.DG Dai.DG Han.DG Georgia_Kotias.SG Russia_Kostenki14.SG Iran_GanjDareh_N Turkey_N Luxembourg_Loschbour.DG codimension 1 f4info: f4rank: 3 dof: 9 chisq: 13.184 tail: 0.15444062 dofdiff: 11 chisqdiff: -13.184 taildiff: 1 B: scale 1.000 1.000 1.000 Papuan.DG -1.097 0.492 0.811 China_Tianyuan -0.767 0.535 -0.869 Karitiana.DG -0.291 1.288 -1.481 Russia_Ust_Ishim_HG.DG -0.375 0.643 0.315 Ami.DG -0.994 0.510 -0.494 Dai.DG -0.983 0.539 1.572 Han.DG -0.963 0.605 -0.636 Georgia_Kotias.SG 1.501 0.330 -1.371 Russia_Kostenki14.SG 0.549 0.927 0.041 Iran_GanjDareh_N 1.419 -1.137 0.197 Turkey_N 1.288 0.728 1.738 Luxembourg_Loschbour.DG 0.935 2.386 0.485 A: scale 273.930 703.064 7484.510 Iran_ShahrISokhta_BA2 -0.214 -1.040 -1.423 Russia_Afanasievo 0.656 1.100 -0.966 Turkmenistan_C_Geoksyur 0.675 -1.307 -0.742 Indian_GreatAndaman_100BP.SG -1.752 0.026 -0.702 full rank f4info: f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 13.184 taildiff: 0.15444062 B: scale 565.582 361.807 314.216 153.075 Papuan.DG -0.032 -0.660 -1.112 1.122 China_Tianyuan 0.293 -0.162 -0.785 0.840 Karitiana.DG -0.674 0.635 -0.889 0.336 Russia_Ust_Ishim_HG.DG -0.603 -0.002 -0.725 0.336 Ami.DG 0.069 -0.569 -1.114 0.948 Dai.DG -0.180 -0.621 -1.170 0.917 Han.DG -0.081 -0.484 -1.127 0.929 Georgia_Kotias.SG -0.526 1.645 1.015 -1.472 Russia_Kostenki14.SG -1.237 0.875 -0.280 -0.646 Iran_GanjDareh_N 0.234 0.577 1.738 -1.419 Turkey_N -1.454 1.435 0.500 -1.300 Luxembourg_Loschbour.DG -2.660 2.080 -0.757 -0.959 A: scale 2.000 2.000 2.000 2.000 Iran_ShahrISokhta_BA2 2.000 0.000 0.000 0.000 Russia_Afanasievo 0.000 2.000 0.000 0.000 Turkmenistan_C_Geoksyur 0.000 0.000 2.000 0.000 Indian_GreatAndaman_100BP.SG 0.000 0.000 0.000 2.000 best coefficients: -1.142 0.285 1.163 0.694 totmean: -1.142 0.285 1.163 0.694 boot mean: -3.061 0.128 2.512 1.421 std. errors: 65.177 5.451 45.803 24.602 error covariance (* 1,000,000) 4248074345 338733373 -2983375643 -1603432074 338733373 29717904 -240564142 -127887135 -2983375643 -240564142 2097869891 1126069895 -1603432074 -127887135 1126069895 605249314 summ: Sohi 4 0.154441 -3.061 0.128 2.512 1.421 4248074345 338733373 -2983375643 -1603432074 29717904 ... -240564142 -127887135 2097869891 1126069895 605249314 fixed pat wt dof chisq tail prob 0000 0 9 13.184 0.154441 -1.142 0.285 1.163 0.694 infeasible 0001 1 10 22.514 0.0126897 0.741 0.457 -0.198 0.000 infeasible 0010 1 10 21.359 0.0187256 0.458 0.438 0.000 0.103 0100 1 10 24.281 0.00688786 -4.050 0.000 3.273 1.776 infeasible 1000 1 10 13.564 0.193805 0.000 0.392 0.335 0.273 0011 2 11 33.295 0.000471316 0.641 0.359 0.000 0.000 0101 2 11 138.217 3.75323e-24 0.915 0.000 0.085 0.000 0110 2 11 136.833 7.1713e-24 1.055 0.000 0.000 -0.055 infeasible 1001 2 11 368.291 0 0.000 0.716 0.284 0.000 1010 2 11 87.584 4.95086e-14 0.000 0.731 0.000 0.269 1100 2 11 101.403 9.41389e-17 0.000 0.000 0.673 0.327 0111 3 12 132.982 1.55391e-22 1.000 0.000 0.000 0.000 1011 3 12 401.703 0 0.000 1.000 0.000 0.000 1101 3 12 630.475 0 0.000 0.000 1.000 0.000 1110 3 12 1211.976 0 0.000 0.000 0.000 1.000 best pat: 0000 0.154441 - - best pat: 1000 0.193805 chi(nested): 0.380 p-value for nested model: 0.53759 best pat: 0011 0.000471316 not nested best pat: 0111 1.55391e-22 chi(nested): 99.687 p-value for nested model: 1.78489e-23 coeffs: -1.142 0.285 1.163 0.694 ## dscore:: f_4(Base, Fit, Rbase, right2) ## genstat:: f_4(Base, Fit, right1, right2) details: Iran_ShahrISokhta_BA2 Papuan.DG -0.000056 -0.128668 details: Russia_Afanasievo Papuan.DG -0.001825 -4.553446 details: Turkmenistan_C_Geoksyur Papuan.DG -0.003539 -8.571556 details: Indian_GreatAndaman_100BP.SG Papuan.DG 0.007327 11.999040 dscore: Papuan.DG f4: 0.000517 Z: 0.862697 details: Iran_ShahrISokhta_BA2 China_Tianyuan 0.000518 0.831362 details: Russia_Afanasievo China_Tianyuan -0.000447 -0.846960 details: Turkmenistan_C_Geoksyur China_Tianyuan -0.002499 -4.526307 details: Indian_GreatAndaman_100BP.SG China_Tianyuan 0.005491 6.754494 dscore: China_Tianyuan f4: 0.000189 Z: 0.237307 details: Iran_ShahrISokhta_BA2 Karitiana.DG -0.001192 -2.441797 details: Russia_Afanasievo Karitiana.DG 0.001755 4.047426 details: Turkmenistan_C_Geoksyur Karitiana.DG -0.002830 -6.250145 details: Indian_GreatAndaman_100BP.SG Karitiana.DG 0.002193 3.307452 dscore: Karitiana.DG f4: 0.000095 Z: 0.142861 details: Iran_ShahrISokhta_BA2 Russia_Ust_Ishim_HG.DG -0.001066 -1.973710 details: Russia_Afanasievo Russia_Ust_Ishim_HG.DG -0.000007 -0.014308 details: Turkmenistan_C_Geoksyur Russia_Ust_Ishim_HG.DG -0.002307 -4.556101 details: Indian_GreatAndaman_100BP.SG Russia_Ust_Ishim_HG.DG 0.002193 3.011066 dscore: Russia_Ust_Ishim_HG.DG f4: 0.000057 Z: 0.082024 details: Iran_ShahrISokhta_BA2 Ami.DG 0.000123 0.255515 details: Russia_Afanasievo Ami.DG -0.001572 -3.709559 details: Turkmenistan_C_Geoksyur Ami.DG -0.003544 -8.060250 details: Indian_GreatAndaman_100BP.SG Ami.DG 0.006194 9.372889 dscore: Ami.DG f4: -0.000408 Z: -0.614023 details: Iran_ShahrISokhta_BA2 Dai.DG -0.000318 -0.755098 details: Russia_Afanasievo Dai.DG -0.001715 -4.637838 details: Turkmenistan_C_Geoksyur Dai.DG -0.003722 -9.849816 details: Indian_GreatAndaman_100BP.SG Dai.DG 0.005988 10.405028 dscore: Dai.DG f4: -0.000296 Z: -0.534441 details: Iran_ShahrISokhta_BA2 Han.DG -0.000144 -0.357393 details: Russia_Afanasievo Han.DG -0.001338 -3.796757 details: Turkmenistan_C_Geoksyur Han.DG -0.003587 -9.818374 details: Indian_GreatAndaman_100BP.SG Han.DG 0.006067 11.229989 dscore: Han.DG f4: -0.000174 Z: -0.329435 details: Iran_ShahrISokhta_BA2 Georgia_Kotias.SG -0.000930 -1.587984 details: Russia_Afanasievo Georgia_Kotias.SG 0.004547 8.589521 details: Turkmenistan_C_Geoksyur Georgia_Kotias.SG 0.003230 5.968268 details: Indian_GreatAndaman_100BP.SG Georgia_Kotias.SG -0.009618 -12.608017 dscore: Georgia_Kotias.SG f4: -0.000566 Z: -0.731048 details: Iran_ShahrISokhta_BA2 Russia_Kostenki14.SG -0.002187 -3.783066 details: Russia_Afanasievo Russia_Kostenki14.SG 0.002419 4.649143 details: Turkmenistan_C_Geoksyur Russia_Kostenki14.SG -0.000891 -1.613882 details: Indian_GreatAndaman_100BP.SG Russia_Kostenki14.SG -0.004217 -5.668760 dscore: Russia_Kostenki14.SG f4: -0.000777 Z: -0.983274 details: Iran_ShahrISokhta_BA2 Iran_GanjDareh_N 0.000414 0.991036 details: Russia_Afanasievo Iran_GanjDareh_N 0.001596 4.322561 details: Turkmenistan_C_Geoksyur Iran_GanjDareh_N 0.005532 14.534597 details: Indian_GreatAndaman_100BP.SG Iran_GanjDareh_N -0.009271 -15.989183 dscore: Iran_GanjDareh_N f4: -0.000023 Z: -0.041053 details: Iran_ShahrISokhta_BA2 Turkey_N -0.002571 -6.652495 details: Russia_Afanasievo Turkey_N 0.003967 11.555648 details: Turkmenistan_C_Geoksyur Turkey_N 0.001591 4.554965 details: Indian_GreatAndaman_100BP.SG Turkey_N -0.008494 -16.426827 dscore: Turkey_N f4: 0.000020 Z: 0.038986 details: Iran_ShahrISokhta_BA2 Luxembourg_Loschbour.DG -0.004703 -7.985889 details: Russia_Afanasievo Luxembourg_Loschbour.DG 0.005749 10.925051 details: Turkmenistan_C_Geoksyur Luxembourg_Loschbour.DG -0.002408 -4.406901 details: Indian_GreatAndaman_100BP.SG Luxembourg_Loschbour.DG -0.006264 -8.207171 dscore: Luxembourg_Loschbour.DG f4: -0.000138 Z: -0.181691 gendstat: Mbuti.DG Papuan.DG 0.863 gendstat: Mbuti.DG China_Tianyuan 0.237 gendstat: Mbuti.DG Karitiana.DG 0.143 gendstat: Mbuti.DG Russia_Ust_Ishim_HG.DG 0.082 gendstat: Mbuti.DG Ami.DG -0.614 gendstat: Mbuti.DG Dai.DG -0.534 gendstat: Mbuti.DG Han.DG -0.329 gendstat: Mbuti.DG Georgia_Kotias.SG -0.731 gendstat: Mbuti.DG Russia_Kostenki14.SG -0.983 gendstat: Mbuti.DG Iran_GanjDareh_N -0.041 gendstat: Mbuti.DG Turkey_N 0.039 gendstat: Mbuti.DG Luxembourg_Loschbour.DG -0.182 gendstat: Papuan.DG China_Tianyuan -0.436 gendstat: Papuan.DG Karitiana.DG -0.654 gendstat: Papuan.DG Russia_Ust_Ishim_HG.DG -0.643 gendstat: Papuan.DG Ami.DG -1.472 gendstat: Papuan.DG Dai.DG -1.569 gendstat: Papuan.DG Han.DG -1.391 gendstat: Papuan.DG Georgia_Kotias.SG -1.303 gendstat: Papuan.DG Russia_Kostenki14.SG -1.625 gendstat: Papuan.DG Iran_GanjDareh_N -0.845 gendstat: Papuan.DG Turkey_N -0.833 gendstat: Papuan.DG Luxembourg_Loschbour.DG -0.840 gendstat: China_Tianyuan Karitiana.DG -0.116 gendstat: China_Tianyuan Russia_Ust_Ishim_HG.DG -0.151 gendstat: China_Tianyuan Ami.DG -0.736 gendstat: China_Tianyuan Dai.DG -0.689 gendstat: China_Tianyuan Han.DG -0.524 gendstat: China_Tianyuan Georgia_Kotias.SG -0.793 gendstat: China_Tianyuan Russia_Kostenki14.SG -0.987 gendstat: China_Tianyuan Iran_GanjDareh_N -0.253 gendstat: China_Tianyuan Turkey_N -0.210 gendstat: China_Tianyuan Luxembourg_Loschbour.DG -0.344 gendstat: Karitiana.DG Russia_Ust_Ishim_HG.DG -0.050 gendstat: Karitiana.DG Ami.DG -0.817 gendstat: Karitiana.DG Dai.DG -0.760 gendstat: Karitiana.DG Han.DG -0.555 gendstat: Karitiana.DG Georgia_Kotias.SG -0.805 gendstat: Karitiana.DG Russia_Kostenki14.SG -1.010 gendstat: Karitiana.DG Iran_GanjDareh_N -0.179 gendstat: Karitiana.DG Turkey_N -0.120 gendstat: Karitiana.DG Luxembourg_Loschbour.DG -0.287 gendstat: Russia_Ust_Ishim_HG.DG Ami.DG -0.601 gendstat: Russia_Ust_Ishim_HG.DG Dai.DG -0.528 gendstat: Russia_Ust_Ishim_HG.DG Han.DG -0.352 gendstat: Russia_Ust_Ishim_HG.DG Georgia_Kotias.SG -0.683 gendstat: Russia_Ust_Ishim_HG.DG Russia_Kostenki14.SG -0.946 gendstat: Russia_Ust_Ishim_HG.DG Iran_GanjDareh_N -0.110 gendstat: Russia_Ust_Ishim_HG.DG Turkey_N -0.055 gendstat: Russia_Ust_Ishim_HG.DG Luxembourg_Loschbour.DG -0.223 gendstat: Ami.DG Dai.DG 0.257 gendstat: Ami.DG Han.DG 0.586 gendstat: Ami.DG Georgia_Kotias.SG -0.187 gendstat: Ami.DG Russia_Kostenki14.SG -0.433 gendstat: Ami.DG Iran_GanjDareh_N 0.575 gendstat: Ami.DG Turkey_N 0.661 gendstat: Ami.DG Luxembourg_Loschbour.DG 0.310 gendstat: Dai.DG Han.DG 0.641 gendstat: Dai.DG Georgia_Kotias.SG -0.362 gendstat: Dai.DG Russia_Kostenki14.SG -0.612 gendstat: Dai.DG Iran_GanjDareh_N 0.480 gendstat: Dai.DG Turkey_N 0.596 gendstat: Dai.DG Luxembourg_Loschbour.DG 0.209 gendstat: Han.DG Georgia_Kotias.SG -0.534 gendstat: Han.DG Russia_Kostenki14.SG -0.790 gendstat: Han.DG Iran_GanjDareh_N 0.272 gendstat: Han.DG Turkey_N 0.385 gendstat: Han.DG Luxembourg_Loschbour.DG 0.048 gendstat: Georgia_Kotias.SG Russia_Kostenki14.SG -0.220 gendstat: Georgia_Kotias.SG Iran_GanjDareh_N 0.755 gendstat: Georgia_Kotias.SG Turkey_N 0.827 gendstat: Georgia_Kotias.SG Luxembourg_Loschbour.DG 0.473 gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 0.968 gendstat: Russia_Kostenki14.SG Turkey_N 1.133 gendstat: Russia_Kostenki14.SG Luxembourg_Loschbour.DG 0.730 gendstat: Iran_GanjDareh_N Turkey_N 0.089 gendstat: Iran_GanjDareh_N Luxembourg_Loschbour.DG -0.154 gendstat: Turkey_N Luxembourg_Loschbour.DG -0.242 ##end of qpAdm: 17.514 seconds cpu 1.380 Mbytes in use